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1.
Research (Wash D C) ; 7: 0342, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38694200

RESUMO

Recently, the development of the Metaverse has become a frontier spotlight, which is an important demonstration of the integration innovation of advanced technologies in the Internet. Moreover, artificial intelligence (AI) and 6G communications will be widely used in our daily lives. However, the effective interactions with the representations of multimodal data among users via 6G communications is the main challenge in the Metaverse. In this work, we introduce an intelligent cross-modal graph semantic communication approach based on generative AI and 3-dimensional (3D) point clouds to improve the diversity of multimodal representations in the Metaverse. Using a graph neural network, multimodal data can be recorded by key semantic features related to the real scenarios. Then, we compress the semantic features using a graph transformer encoder at the transmitter, which can extract the semantic representations through the cross-modal attention mechanisms. Next, we leverage a graph semantic validation mechanism to guarantee the exactness of the overall data at the receiver. Furthermore, we adopt generative AI to regenerate multimodal data in virtual scenarios. Simultaneously, a novel 3D generative reconstruction network is constructed from the 3D point clouds, which can transfer the data from images to 3D models, and we infer the multimodal data into the 3D models to increase realism in virtual scenarios. Finally, the experiment results demonstrate that cross-modal graph semantic communication, assisted by generative AI, has substantial potential for enhancing user interactions in the 6G communications and Metaverse.

2.
Plants (Basel) ; 13(4)2024 Feb 07.
Artigo em Inglês | MEDLINE | ID: mdl-38498409

RESUMO

Drought-induced metabolic dysregulation significantly enhances the production of reactive oxygen species (ROS), which, in turn, exerts a substantial influence on the oxidation-reduction regulatory status of cells. These ROS, under conditions of drought stress, become highly reactive entities capable of targeting various plant organelles, metabolites, and molecules. Consequently, disruption affects a wide array of metabolic pathways and eventually leads to the demise of the cells. Given this understanding, this study aimed to investigate the effects of different drought stress levels on the growth and development of the invasive weed Wedelia trilobata and its co-responding native counterpart Wedelia chinensis. Both plants evolved their defense mechanisms to increase their antioxidants and hormone contents to detoxify ROS to avoid oxidative damage. Still, the chlorophyll content fluctuated and increased in a polyethylene-glycol-simulated drought. The proline content also rose in the plants, but W. chinensis showed a significant negative correlation between proline and malondialdehyde in different plant parts. Thus, W. trilobata and W. chinensis exhibited diverse or unlike endogenous hormone regulation patterns under drought conditions. Meanwhile, W. trilobata and W. chinensis pointedly increased the content of indole acetic acid and gibberellic acid in a different drought stress environment. A positive correlation was found between endogenous hormones in other plant parts, including in the roots and leaves. Both simulated and natural drought conditions exerted a significant influence on both plant species, with W. trilobata displaying superior adaptation characterized by enhanced growth, bolstered antioxidant defense mechanisms, and heightened hormonal activities.

3.
Biol Futur ; 2024 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-38300414

RESUMO

Invasive alien species can affect plant taxonomic and functional diversity. Multiple invasive alien species can co-invade the same plant community. However, the effects of such co-invasion on plant taxonomic and functional diversity are currently unclear. Our study aimed to estimate the effects of co-invasion by three Asteraceae invasive alien species (i.e., Conyza canadensis (L.) Cronquist, Conyza sumatrensis (S.F. Blake) Pruski and G. Sancho, and Solidago canadensis L.) on plant taxonomic and functional diversity in herbaceous ruderal communities in southern Jiangsu, China. The effects of these three invasive alien species under seven invasion combinations (including invasion by one invasive alien species, co-invasion by two invasive alien species, and co-invasion by these three invasive alien species) on plant taxonomic and functional diversity were investigated in a comparative field study of herbaceous ruderal communities. Niche differentiation mediated the functional divergence between these three invasive alien species and natives under all invasion combinations. These three invasive alien species significantly increased plant taxonomic diversity (especially plant diversity and richness) and plant functional diversity (especially Rao's quadratic entropies) under all invasion combinations. The relative abundance of invasive alien species was significantly positively associated with plant functional diversity (especially community-weighted mean trait values and Rao's quadratic entropy). The number of invasive alien species was significantly positively associated with plant taxonomic diversity (especially plant diversity and richness) and plant functional diversity (especially Rao's quadratic entropies). Thus, co-invasion by these three invasive alien species may synergistically increase plant taxonomic diversity (especially plant diversity and richness) and functional diversity (especially Rao's quadratic entropies).

4.
Ecotoxicology ; 32(10): 1221-1232, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-38032393

RESUMO

The phytotoxicity of invasive plants (IPS) has been identified as one of the main factors influencing their invasion success. The invasion of IPS can occur to varying degrees in the habitats. Two IPS can invade one habitat. This study aimed to evaluate the mono- and co-phytotoxicity of two Asteraceae IPS Solidago canadensis L. and Bidens pilosa L. with different invasion degrees (including light invasion (relative abundance <50%) and heavy invasion (relative abundance ≥50%)) on the horticultural Asteraceae species Lactuca sativa L., through a hydroponic experiment conducted on 9 cm Petri dishes. Leaf extracts of the two IPS can cause significant mono- and co-phytotoxicity. The mono- and co-phytotoxicity of the two IPS were concentration-dependent. The mono-phytotoxicity of S. canadensis was significantly increased with increasing invasion degree, but the opposite was true for the mono-phytotoxicity of B. pilosa. Leaf extracts of B. pilosa with light invasion caused stronger phytotoxicity than those of S. canadensis with light invasion. There may be an antagonistic effect for the co-phytotoxicity caused by mixed leaf extracts of the two IPS compared with those of either S. canadensis or B. pilosa. The phytotoxicity of the two IPS on the growth performance of neighboring plants may play a more important role in their mono-invasion than in their co-invasion. The phytotoxicity appeared to affect the growth performance of S. canadensis individuals more significantly when the invasion was heavy, while the growth performance of B. pilosa individuals seemed to be more influenced by phytotoxicity when the invasion was light. Consequently, the concentration of leaf extracts of IPS, the invasion degree of IPS, the species identity of IPS, and the species number of IPS modulated the mono- and co-phytotoxicity of the two IPS.


Assuntos
Asteraceae , Bidens , Solidago , Humanos , Espécies Introduzidas
6.
Plants (Basel) ; 12(13)2023 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-37447084

RESUMO

Invasive and native plants can coexist in the same habitat; however, the decomposition process may be altered by the mixing of invasive and native leaves. Heavy metal contamination may further alter the co-decomposition of both leaf types. This study evaluated the effects of two concentrations (35 mg·L-1 and 70 mg·L-1) and three types (Pb, Cu, and combined Pb + Cu) of heavy metal contamination on the co-decomposition of leaves of the invasive tree Rhus typhina L. and the native tree Koelreuteria paniculata Laxm, as well as the mixed effect intensity of the co-decomposition of the mixed leaves. A polyethylene litterbag experiment was performed over six months. The decomposition coefficient of the two trees, mixed effect intensity of the co-decomposition, soil pH and enzymatic activities, soil bacterial alpha diversity, and soil bacterial community structure were determined. A high concentration of Pb and combined Pb + Cu significantly reduced the decomposition rate of R. typhina leaves. A high concentration of Pb or Cu significantly reduced the decomposition rate of the mixed leaves. In general, R. typhina leaves decomposed faster than K. paniculata leaves did. There were synergistic effects observed for the co-decomposition of the mixed leaves treated with combined Pb + Cu, regardless of concentration, but there were antagonistic effects observed for the co-decomposition of the mixed leaves treated with either Pb or Cu, regardless of concentration. A high concentration of Pb or Cu may increase antagonistic effects regarding the co-decomposition of mixed-leaf groups. Thus, heavy metal contamination can significantly affect the intensity of the mixed effect on the co-decomposition of heterogeneous groups of leaves.

7.
Ecotoxicology ; 32(1): 114-126, 2023 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-36652123

RESUMO

Most of the allelopathic studies have focused on the independent allelopathy of one invasive plant, but have ignored the co-allelopathy of the two invasives. The variations in the type of acid rain can modulate the invasiveness of invasives via the changes in the allelopathy. Thus, it is vital to elucidate the allelopathy of invasives, particularly the co-allelopathy of the two invasives, under acid rain with different types, to illuminate the mechanisms driving the co-invasion of two invasives under diversified acid rain. However, little progress has been finished in this aspect presently. This study aimed to evaluate the co-allelopathy of two Asteraceae invasives Solidago canadensis L. and Erigeron annuus L. treated with acid rain with different nitrogen-to-sulfur ratios on seed germination and seedling growth of the horticultural Asteraceae species Lactuca sativa L. via a hydroponic experiment. Aqueous extracts of the two Asteraceae invasives generated obvious allelopathy on L. sativa. S. canadensis aqueous extracts caused stronger allelopathy. There may be an antagonistic effect for the co-allelopathy of the two Asteraceae invasives. Nitric acid at pH 5.6 weakened the allelopathy of the two Asteraceae invasives, but the other types of acid rain strengthened the allelopathy of the two Asteraceae invasives. The allelopathy of the two Asteraceae invasives increases with the increasing acidity of acid rain, but the allelopathy of the two Asteraceae invasives decreases with the increasing nitrogen-to-sulfur ratio of acid rain. Accordingly, the species number of invasives, and the acidity and type of acid rain modulated the impacts of acid rain on the allelopathy of the two Asteraceae invasives.


Assuntos
Chuva Ácida , Asteraceae , Solidago , Germinação , Alelopatia , Plântula , Extratos Vegetais
8.
Front Plant Sci ; 13: 1020621, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36452088

RESUMO

Invasive plants threaten biodiversity and cause huge economic losses. It is thought that global change factors (GCFs) associated with climate change (including shifts in temperature, precipitation, nitrogen, and atmospheric CO2) will amplify their impacts. However, only few studies assessed mixed factors on plant invasion. We collated the literature on plant responses to GCFs to explore independent, combined, and interactive effects on performance and competitiveness of native and invasive plants. From 176 plant species, our results showed that: (1) when native and invasive plants are affected by both independent and multiple GCFs, there is an overall positive effect on plant performance, but a negative effect on plant competitiveness; (2) under increased precipitation or in combination with temperature, most invasive plants gain advantages over natives; and (3) interactions between GCFs on plant performance and competitiveness were mostly synergistic or antagonistic. Our results indicate that native and invasive plants may be affected by independent or combined GCFs, and invasive plants likely gain advantages over native plants. The interactive effects of factors on plants were non-additive, but the advantages of invasive plants may not increase indefinitely. Our findings show that inferring the impacts of climate change on plant invasion from factors individually could be misleading. More mixed factor studies are needed to predict plant invasions under global change.

9.
Ecotoxicol Environ Saf ; 243: 114012, 2022 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-36030689

RESUMO

Co-invasion by two invasive plant species (IPS) can occur in the same habitat. Diversified acid deposition may change the co-invasion process by altering litter decomposition and plant-soil feedback signalling. This study examined the co-decomposition of two Asteraceae IPS (Solidago canadensis L. and Bidens pilosa L.) on litter decomposition rate, soil enzyme activities, and soil N-fixing bacterial communities under diversified acid deposition (mixed acid deposition at pH 5.6 and at pH 4.5, sulfuric acid at pH 4.5, and nitric acid at pH 4.5). B. pilosa litter degraded faster than S. canadensis litter. Acid deposition at higher acidity accelerated the decomposition rate of both pure S. canadensis litter and the equally mixed litters from the two Asteraceae IPS. Antagonistic responses may occur during the co-decomposition of the two Asteraceae IPS with mixed acid deposition, regardless of the pH, as well as with nitric acid deposition at pH 4.5; in contrast, there may be neutral responses for the co-decomposition process with sulfuric acid at pH 4.5. The type of acid deposited may be one of the key factors affecting the intensity of the mixing effect affecting the co-decomposition. Acid deposition at higher acidity weakened the antagonistic responses for the co-decomposition of the two Asteraceae IPS compared with the response to weak acids. Together, these results indicate that acid deposition at higher acidity could facilitate the co-invasion of the two Asteraceae IPS mainly through accelerated litter decomposition as well as weakened antagonistic responses for co-decomposition.


Assuntos
Asteraceae , Solidago , Ecossistema , Espécies Introduzidas , Ácido Nítrico , Folhas de Planta , Plantas , Solo/química , Ácidos Sulfúricos
10.
An Acad Bras Cienc ; 94(2): e20201661, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35703691

RESUMO

This study aimed to estimate the allelopathic intensity of four Asteraceae invasive plant species (IPS), including Conyza canadensis (L.) Cronq., Erigeron annuus (L.) Pers., Bidens pilosa (L.), and Aster subulatus Michx., by testing the effect of leaf extracts on the seed germination and seedling growth (SGe and SGr) of lettuce (Lactuca sativa L.) in combination with two particle sizes of silver nanoparticles. These four IPS decreased the germination of lettuce seeds but increased the growth of lettuce seedlings. The allelopathic intensity of the four IPS decreased in the following order: B. pilosa > C. canadensis > E. annuus > A. subulatus. Silver nanoparticles decreased the SGe and SGr of lettuce. The 20 nm silver nanoparticles affected the competition intensity for water and the absorption of inorganic salts by lettuce more intensively than the 80 nm nanoparticles. Silver nanoparticles intensify the allelopathic intensity of the four invasive plant species on the SGe and SGr of lettuce. The allelopathic intensity of B. pilosa was higher than that of the other three IPS when they were polluted with silver nanoparticles. Thus, silver nanoparticles could facilitate the invasion process of the four IPS, particularly B. pilosa, via an increase in the intensity of allelopathy.


Assuntos
Asteraceae , Nanopartículas Metálicas , Alelopatia , Germinação , Espécies Introduzidas , Lactuca , Extratos Vegetais/farmacologia , Plântula , Prata/farmacologia
11.
Sci Total Environ ; 813: 152628, 2022 Mar 20.
Artigo em Inglês | MEDLINE | ID: mdl-34963604

RESUMO

Two invasive plant species (IPS) can co-invade the same plant community. As the number of IPS increases under the co-invasion of two IPS, plant taxonomic and functional diversity, community invasibility, community stability, invasion resistance, and invasion intensity and invasiveness of IPS and their interrelationships may be altered. This study aimed to quantify the contribution of plant taxonomic and functional diversity, community invasibility, community stability, and invasion intensity and invasiveness of IPS to the invasion resistance of native plant communities under the co-invasion of the two IPS Erigeron annuus (L.) Pers. and Solidago canadensis L. in eastern China. This study also defined a method to quantify the invasion resistance of native plant communities designated the invasion resistance index. The community-weighted mean trait values of native plants and plant diversity are the factors that are the most critical to determine the invasion resistance of native plant communities. Thus, the invasion resistance of native plant communities primarily depends on the three following factors: the relative abundance of natives, the growth performance of natives, and the diversity of natives. All levels of invasion significantly decrease the invasion resistance of native plant communities. The two IPS antagonistically affect the invasion resistance of native plant communities less under co-invasion compared with their independent invasion.


Assuntos
Erigeron , Solidago , Ecossistema , Espécies Introduzidas , Plantas
12.
Anal Methods ; 13(38): 4361-4369, 2021 10 08.
Artigo em Inglês | MEDLINE | ID: mdl-34494633

RESUMO

Colorimetric tests for at-home health monitoring became popular 50 years ago with the advent of the urinalysis test strips, due to their reduced costs, practicality, and ease of operation. However, developing digital systems that can interface these sensors in an efficient manner remains a challenge. Efforts have been put towards the development of portable optical readout systems, such as smartphones. However, their use in daily settings is still limited by their error-prone nature associated to optical noise from the ambient lighting, and their low sensitivity. Here, a smartphone application (Colourine) to readout colorimetric signals was developed on Android OS and tested on commercial urinalysis test strips for pH, proteins, and glucose detection. The novelty of this approach includes two features: a pre-calibration step where the user is asked to take a photo of the commercial reference chart, and a CIE-RGB-to-HSV color space transformation of the acquired data. These two elements allow the background noise given by environmental lighting to be minimized. The sensors were characterized in the ambient light range 100-400 lx, yielding a reliable output. Readouts were taken from urine strips in buffer solutions of pH (5.0-9.0 units), proteins (0-500 mg dL-1) and glucose (0-1000 mg dL-1), yielding a limit of detection (LOD) of 0.13 units (pH), 7.5 mg dL-1 (proteins) and 22 mg dL-1 (glucose), resulting in an average LOD decrease by about 2.8 fold compared to the visual method.


Assuntos
Colorimetria , Smartphone , Glucose , Iluminação , Limite de Detecção
13.
Physiol Mol Biol Plants ; 27(3): 483-495, 2021 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-33854278

RESUMO

The effect of allelopathy from invasive alien plants (IAPs) on native species is one of the main factors for their adaptation and diffusion. IAPs can have different degrees of invasion under natural succession and are distributed in numerous regions. Seed germination and seedling growth (SGe-SGr) play a crucial role in population recruitment. Thus, it is critical to illustrate the differences in the allelopathy caused by an IAP with different degrees of invasion in numerous regions on SGe-SGr of native species to describe the primary force behind their adaptation and diffusion. This study assessed the allelopathy of the notorious IAP horseweed (Conyza canadensis (L.) Cronq.) on SGe-SGr of the native lettuce species (Lactuca sativa L.) under different degrees of invasion (light degree of invasion and heavy degree of invasion) in three provinces (Jiangsu, Anhui, and Hubei) along the Yangtze River in China. The allelopathy of horseweed leaf extract on lettuce SGe-SGr remarkably increased with the increased degree of invasion, which may be due to the buildup of allelochemicals generated by horseweed with a heavy degree of invasion compared with a light degree of invasion. A high concentration of horseweed leaf extract resulted in noticeably stronger allelopathy on lettuce SGe-SGr compared to the extract with a low concentration. There are noticeable differences in the allelopathy of the extract of horseweed leaves from different provinces on lettuce SGe-SGr with the following order i.e. Jiangsu > Hubei > Anhui. This may be due to the high latitudes for the three sampling sites in Jiangsu compared with the latitudes for the collection sites in Hubei and Anhui. There are certain differences in the environments among the three provinces. Thus, the allelopathy of horseweed on SGe-SGr of lettuce may have a greater negative impact in Jiangsu compared to the other two provinces. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12298-021-00962-y.

14.
Int J Phytoremediation ; 23(12): 1289-1300, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33689505

RESUMO

Atmospheric nitrogen (N) deposition (AtNiDe) and drought stress (DS) have strongly affected plant growth. However, previous research has primarily focused on the effects of AtNiDe with various levels and DS on plant growth (especially seed germination and seedling growth). This study aimed to evaluate the single and combined effects of AtNiDe with four types (compounds: NH4-N, NO3-N, CO(NH2)2-N, and a mixture of the three types of N) and DS (three levels: control, low, and high) on wheat seed germination and seedling growth. The AtNiDe treatment increased wheat seed germination and seedling growth. Mixed N exerted a greater positive effect on wheat seed germination and seedling growth than single N forms. Organic N also had a greater positive effect on wheat seed germination and seedling growth than reduced inorganic N. The DS treatment decreased wheat seed germination and seedling growth. The AtNiDe treatment alleviated the adverse effects of DS on wheat seed germination and seedling growth. Mixed N had the greatest effect on alleviating the adverse effects of DS on wheat seed germination and seedling growth. Thus, AtNiDe and DS antagonistically affected wheat seed germination and seedling growth. NOVELTY STATEMENT This study assessed the single and combined effects of atmospheric nitrogen deposition with four types and drought stress at three levels on wheat seed germination and seedling growth. Generally, nitrogen and drought antagonistically affected wheat seed germination and seedling growth.


Assuntos
Germinação , Plântula , Biodegradação Ambiental , Nitrogênio , Pressão Osmótica , Sementes , Triticum
15.
Sci Total Environ ; 768: 144518, 2021 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-33454473

RESUMO

Invasive alien plants (IAPs) can negatively affect plant taxonomic diversity, community stability, and invasibility in the invaded habitats. This study aimed to assess the degree of influence of the IAP Solidago canadensis L. under various levels of invasion (i.e., light, moderate, and heavy invasion based on its relative abundance in the invaded communities) on plant taxonomic diversity, community stability, and invasibility. In addition, we determined the contribution of plant taxonomic diversity to community stability and invasibility under various levels of S. canadensis invasion. The degree of influence of S. canadensis on plant taxonomic diversity and community stability increases as the level of S. canadensis invasion increases. Community invasibility increases as the level of S. canadensis invasion increases. The competitive advantage of S. canadensis is negatively associated with all indexes of plant taxonomic diversity and community stability but positively connected with community invasibility. Community stability is positively related to Shannon's diversity and Simpson's dominance indexes but negatively associated with community invasibility. Inversely, communities were more likely to be invaded when they had less plant taxonomic diversity. Thus, plant communities with lower values of plant taxonomic diversity and community stability are more vulnerable to S. canadensis invasion. Plant diversity causes a greater pressure on community stability than the other indexes of plant taxonomic diversity under various levels of S. canadensis invasion. However, the contribution intensity of the number of plant species to community invasibility is higher than the other indexes of plant taxonomic diversity under various levels of S. canadensis invasion.


Assuntos
Solidago , Biodiversidade , Ecossistema , Espécies Introduzidas , Solidago/genética
16.
GigaByte ; 2021: gigabyte17, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-36824331

RESUMO

The humpback puffer, Tetraodon palembangensis, is a poisonous freshwater pufferfish species mainly distributed in Southeast Asia (Thailand, Laos, Malaysia and Indonesia). The humpback puffer has many interesting biological features, such as inactivity, tetrodotoxin production and body expansion. Here, we report the first chromosome-level genome assembly of the humpback puffer. The genome size is 362 Mb, with a contig N50 value of ∼1.78 Mb and a scaffold N50 value of ∼15.8 Mb. Based on this genome assembly, ∼61.5 Mb (18.11%) repeat sequences were identified, 19,925 genes were annotated, and the function of 90.01% of these genes could be predicted. Finally, a phylogenetic tree of ten teleost fish species was constructed. This analysis suggests that the humpback puffer and T. nigroviridis share a common ancestor 18.1 million years ago (MYA), and diverged from T. rubripes 45.8 MYA. The humpback puffer genome will be a valuable genomic resource to illustrate possible mechanisms of tetrodotoxin synthesis and tolerance.

17.
GigaByte ; 2021: gigabyte32, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-36824335

RESUMO

The Bicolor Angelfish, Centropyge bicolor, is a tropical coral reef fish. It is named for its striking two-color body. However, a lack of high-quality genomic data means little is known about the genome of this species. Here, we present a chromosome-level C. bicolor genome constructed using Hi-C data. The assembled genome is 650 Mbp in size, with a scaffold N50 value of 4.4 Mbp, and a contig N50 value of 114 Kbp. Protein-coding genes numbering 21,774 were annotated. Our analysis will help others to choose the most appropriate de novo genome sequencing strategy based on resources and target applications. To the best of our knowledge, this is the first chromosome-level genome for the Pomacanthidae family, which might contribute to further studies exploring coral reef fish evolution, diversity and conservation.

18.
Sci Total Environ ; 755(Pt 2): 142619, 2021 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-33038810

RESUMO

The alpine grassland ecosystems in Northern Tibet is seriously degraded. The condition of the degraded alpine grassland ecosystems in Northern Tibet (DAGENT) triggers a serious threat to environmental health and ecological safety of the local society. Thus, restoring DAGENT is a pressing task presently to sustain social stability and sustainable development. Soil microorganisms act a vital role in the structure and function execution of ecosystems. Further, bacteria are sensitive to external disturbances. This study purposes to evaluate the effects of the three types of restoration processing (i.e., the separated plant sowing, the separated water-soluble polyurethane fertilization, and the combined plant sowing and water-soluble polyurethane fertilization) on soil bacterial communities in DAGENT by using high-throughput sequencing with Illumina Novaseq 6000. The separated plant sowing significantly elevations soil pH, and soil nitrogen and phosphorus contents in DAGENT. Additionally, the combined plant sowing and water-soluble polyurethane fertilization markedly improves soil nitrogen content in DAGENT. The combined plant sowing and water-soluble polyurethane fertilization antagonistically affect soil pH and soil phosphorus content in DAGENT. The three types of restoration processing have no obvious effects on the alpha diversity of soil bacteria in DAGENT. But the three types of restoration processing create obvious alterations in the beta diversity of soil bacteria and the relative abundance of soil bacterial proportions in DAGENT. The three types of restoration processing also cause significant modifications in metabolic function of soil bacteria in DAGENT. The leading reason for the altered community structure and metabolic function of soil bacteria may be attributed to the changes in plant growing condition as well as soil pH and nutrient contents in DAGENT. Consequently, the three types of restoration processing are mainly changed the community structure and metabolic function of soil bacteria, rather than the alpha diversity of soil bacteria, in DAGENT.


Assuntos
Pradaria , Solo , Bactérias , Ecossistema , Nitrogênio/análise , Microbiologia do Solo , Tibet
20.
Gigascience ; 9(12)2020 12 15.
Artigo em Inglês | MEDLINE | ID: mdl-33319911

RESUMO

BACKGROUND: The scaly-foot snail (Chrysomallon squamiferum) is highly adapted to deep-sea hydrothermal vents and has drawn much interest since its discovery. However, the limited information on its genome has impeded further related research and understanding of its adaptation to deep-sea hydrothermal vents. FINDINGS: Here, we report the whole-genome sequencing and assembly of the scaly-foot snail and another snail (Gigantopelta aegis), which inhabits similar environments. Using Oxford Nanopore Technology, 10X Genomics, and Hi-C technologies, we obtained a chromosome-level genome of C. squamiferum with an N50 size of 20.71 Mb. By constructing a phylogenetic tree, we found that these 2 deep-sea snails evolved independently of other snails. Their divergence from each other occurred ∼66.3 million years ago. Comparative genomic analysis showed that different snails have diverse genome sizes and repeat contents. Deep-sea snails have more DNA transposons and long terminal repeats but fewer long interspersed nuclear elements than other snails. Gene family analysis revealed that deep-sea snails experienced stronger selective pressures than freshwater snails, and gene families related to the nervous system, immune system, metabolism, DNA stability, antioxidation, and biomineralization were significantly expanded in scaly-foot snails. We also found 251 H-2 Class II histocompatibility antigen, A-U α chain-like (H2-Aal) genes, which exist uniquely in the Gigantopelta aegis genome. This finding is important for investigating the evolution of major histocompatibility complex (MHC) genes. CONCLUSION: Our study provides new insights into deep-sea snail genomes and valuable resources for further studies.


Assuntos
Fontes Hidrotermais , Adaptação Fisiológica/genética , Animais , Genoma , Humanos , Filogenia , Caramujos/genética
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